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CPT 87046 Fee Schedule

Medicare rates as of January 2026

CPT 87046 is classified under Pathology and Laboratory Procedures, in the Microbiology Procedures subgroup.

Stool Test For Bacteria, This Test Is Done To Look For The Presence Of Bacteria Which May Cause A Diarrheal Illness. A Specimen Of Fecal Material Is Submitted And The Types Of Bacteria Which Grow From That Specimen Are Analyzed.
Key FactDetail
Service Type

Pathology and Laboratory Procedures

Microbiology Procedures

Common Place of Service

81 - Independent Laboratory

11 - Office

Common Modifiers

26 - Professional component

91 - Repeat Lab Test

Complexity LevelLow
Medicare Fee Schedule$9.44 national lab fee schedule rate (2026) · View Medicare rates for 87046
Medicaid Fee Schedule$8.685 median of the 8 states in the free preview · View Medicaid rates for 87046

National average reimbursement for CPT 87046 by major payers:

BCBS / Anthem logo

$9.24

BCBS / Anthem

UnitedHealthcare logo

$6.67

UnitedHealthcare

Aetna logo

$10.77

Aetna

Cigna logo

$13.48

Cigna

Compare published rates across providers.

Choose a payer to see a sample of rates for CPT 87046.

CPT 87046
5 of 25 sample ratesHigher to lower in this preview
  1. St. Luke'S Community Health Services, St. Luke'S The Woodlands Hospital

    St Lukes Community Health Services

    TXGeneral Acute Care HospitalNPI 1942208616Tax ID 76-0536234

    $17.48Published rate
  2. Children'S Hospital

    Childrens Hospital Inc

    LAChildren's HospitalNPI 1104819366Tax ID 72-0467503

    $11.59Published rate
  3. Scott & White Memorial Hospital, Baylor Scott & White Medical Center - Temple

    Scott & White Memorial Hospital

    TXGeneral Acute Care HospitalNPI 1477516466Tax ID 74-1166904

    $9.43Published rate
  4. Granbury Hospital Corporation, Lake Granbury Medical Center

    Granbury Hospital Corporation

    TXGeneral Acute Care HospitalNPI 1114998911Tax ID 75-2682017

    $9.43Published rate
  5. Jps Health

    Los Barrios Unidos Community Clinic Inc

    TXGeneral Acute Care HospitalNPI 1457509242Tax ID 75-1378664

    $3.96Published rate

National sample. Rates vary by location, specialty, and contract.

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CPT 87046 vs. Other Microbiology Procedures Codes

The table lists codes related to 87046. Select one to see its fee schedule.

CodeComplexityDescription
87003-CPTLowControl Test For Infection, The Test Is Used To Diagnose An Infection By Injecting A Small Amount Of The Test Sample Into A Small Animal. The Animal Is Observed For Signs Of An Infection For Up To Three Weeks.
87015-CPTLowInfection Test Concentration, This Test Method Identifies Bacteria Or Parasites That Are The Cause Of An Infection. The Sample Is Concentrated So That The Infection Organisms Collect Together.
87040-CPTLowBlood Test Bacteria Infection, This Test Identifies Early Signs Of A Bacterial Growth And Thus Infection In A Blood Sample. Infections In The Blood (Bacteremia Or Sepsis) Can Cause Serious Illness.
87046-CPTLowStool Test For Bacteria, This Test Is Done To Look For The Presence Of Bacteria Which May Cause A Diarrheal Illness. A Specimen Of Fecal Material Is Submitted And The Types Of Bacteria Which Grow From That Specimen Are Analyzed.

What is a fee schedule?

A fee schedule is a list of fixed prices that healthcare providers charge for specific services, including CPT 87046. These prices vary depending on payer type (Medicare, Medicaid, private insurance), geographic location, and provider contracts.

Understanding the 87046 fee schedule helps patients estimate costs and providers optimize billing for accurate reimbursements.

Factors that affect fee schedules


Medicare & Medicaid Rates

Government-set reimbursement amounts


Private Insurance Rates

Negotiated rates between providers and insurance companies


Geographic Location

Costs may be higher in urban areas.


Provider Type

Hospital providers may have different rates than private practice.

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