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CPT 88249 Fee Schedule

Last Verified: January 2026

Healthcare providers use this code to document and receive reimbursement for visits that address moderate-level medical decision-making, often including multiple diagnoses or prescription management.

Chromosome Analysis For Breakage Syndromes; Score 100 Cells, Clastogen Stress (Eg, Diepoxybutane, Mitomycin C, Ionizing Radiation, Uv Radiation)
Key FactDetail
Service Type

Pathology and Laboratory Procedures

Cytogenetic Studies

Common Place of Service

81 - Independent Laboratory

22 - On Campus Outpatient Hospital

Common Modifiers

None

90 - Reference Laboratory

91 - Repeat Lab Test

Complexity LevelLow
Medicare Fee ScheduleView Medicare rates for 88249

National average reimbursement for CPT 88249 by major payers:

bcbs

$172.02

uhc

$165.02

aetna

$189.68

cigna

$257.49

Preview provider-level rates for...
For billing codeCPT 88249
PayerCodeRateNPITax IDStateSpecialty

Select a payer to view fee schedule data

Choose a payer from the options above to see rates for CPT 88249

United
88249$194.431033320049 - ANN STECK344428256 - TOLEDO HOSPITALOHFamily Medicine Physician (207Q00000X)
United
88249$418.031073502985 - CHU CHEN42484572 - MERRIMACK VALLEY PEDIATRIC ASSOCIATES, INC.MAPediatrics Physician (208000000X)
United
88249$96.771366400376 - SUNRISE HOME HEALTH CARE INC.650307774 - (FL) SUNRISE HOME HEALTH CARE INCFLHome Health Agency (251E00000X)
United
88249$103.901619087590 - MIGUEL ARENAS300394179 - (AZ) MIGUEL A ARENAS MD PCAZGastroenterology Physician (207RG0100X)
United
88249$329.941255478004 - CHRISTOPHER RAIO111635088 - MERCY MEDICAL CENTERNYEmergency Medicine Physician (207P00000X)
United
88249$40.001649599168 - RESTORATIVE HEALTH REHABILITATION INC272533824 - (FL) RESTORATIVE HEALTH REHABILITATION INCFLHome Health Agency (251E00000X)
United
88249$55.001801164967 - DA PEDIATRIC REHABILITATION270939565 - (FL) DA PEDIATRIC REHABILITATIONFLHome Health Agency (251E00000X)
United
88249$103.901609005479 - WILLIAM YANG953841576 - (CA) RENAL CONSULTANTS MEDICAL GROUPCANephrology Physician (207RN0300X)
United
88249$173.171255478004 - CHRISTOPHER RAIO111888924 - GOOD SAMARITAN HOSPTIAL MEDICAL CENTERNYEmergency Medicine Physician (207P00000X)
United
88249$55.001801164967 - DA PEDIATRIC REHABILITATION270939565 - (FL) DA PEDIATRIC REHABILITATIONFLHome Health Agency (251E00000X)
United
88249$155.851255478004 - CHRISTOPHER RAIO111888924 - GOOD SAMARITAN HOSPTIAL MEDICAL CENTERNYEmergency Medicine Physician (207P00000X)
United
88249$291.951295728186 - BAYCARE HOME CARE, INC.593582520 - (FL) BAYCARE HOME CARE INCFLHome Health Agency (251E00000X)
United
88249$249.361255478004 - CHRISTOPHER RAIO112050523 - ST FRANCIS HOSPITALNYEmergency Medicine Physician (207P00000X)
United
88249$103.901003166612 - MATTHEW LILLEY931261079 - THE ORTHOPEDIC AND NEUROSURGICAL CENTER OF THE CASCADESOROrthopaedic Surgery Physician (207X00000X)
United
88249$380.971073502985 - CHU CHEN42484572 - MERRIMACK VALLEY PEDIATRIC ASSOCIATES, INC.MAPediatrics Physician (208000000X)
United
99202$100.0012345678901234567890CACardiologist
United
99202$100.0012345678901234567890CACardiologist
United
99202$100.0012345678901234567890CACardiologist
United
99202$100.0012345678901234567890CACardiologist
United
99202$100.0012345678901234567890CACardiologist
United
99202$100.0012345678901234567890CACardiologist
United
99202$100.0012345678901234567890CACardiologist
United
99202$100.0012345678901234567890CACardiologist
United
99202$100.0012345678901234567890CACardiologist
United
99202$100.0012345678901234567890CACardiologist

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CPT 88249 vs. Other Cytogenetic Studies Codes

The CPT 88249 code is part of the Pathology and Laboratory Procedures services used for Cytogenetic Studies. It represents a moderate-complexity encounter and is one of several codes that vary based on time spent, level of medical decision-making, and documentation requirements.

The CPT 88249 code involves more provider time and moderate medical decision-making, unlike lower-level codes that require less time and simpler assessments. It typically includes multiple diagnoses, medication management, or test interpretation, leading to higher reimbursement and more detailed documentation requirements.

CodeComplexityDescription
88241-CPTLowThawing And Expansion Of Frozen Cells Each Aliquot
88245-CPTLowChromosome Analysis For Breakage Syndromes; Score 25 Cells (Sce Study), Count 5 Cells, 1 Karyotype, With Banding (Eg, Bl
88248-CPTLowChromosome Analysis For Breakage Syndromes; Baseline Breakage, Score 50-100 Cells, Count 20 Cells, 2 Karyotypes (Eg, For Ataxia Telangiectasia, Fanconi Anemia, Fragile X)
88249-CPTLowChromosome Analysis For Breakage Syndromes; Score 100 Cells, Clastogen Stress (Eg, Diepoxybutane, Mitomycin C, Ionizing Radiation, Uv Radiation)

What is a fee schedule?

A fee schedule is a list of fixed prices that healthcare providers charge for specific services, including CPT 88249. These prices vary depending on payer type (Medicare, Medicaid, private insurance), geographic location, and provider contracts.

Understanding the 88249 fee schedule helps patients estimate costs and providers optimize billing for accurate reimbursements.

Factors that affect fee schedules


Medicare & Medicaid Rates

Government-set reimbursement amounts


Private Insurance Rates

Negotiated rates between providers and insurance companies


Geographic Location

Costs may be higher in urban areas.


Provider Type

Hospital providers may have different rates than private practice.

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